This is a huge feature for people who like to walk in NYC, as I do. 
Now when you click on a blue M, which is the symbol for a subway station, it hightlights the route of one of the lines going through that station. 
For example, I clicked on the High Street/Brooklyn Bridge station, and it showed the route of the A and C lines in blue. 
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Click on Grand Central and it shows the routes for the Lexington Ave lines, the 4, 5 and 6. And the Flushing line (the 7). 
This is a very important connection. Not sure when it came online, but all NYers and esp people who visit, will want to know. 
PS: Same with the Bay Area, Boston, Chicago. 